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Bioinformatics platform

GINYS-IDIBELL-009
Jose Luis Mosquera
Cap de Plataforma
bioinformatics@idibell.cat | ORCID | PRC page
FACILITY WEBSITE
The IDIBELL Bioinformatics Unit (IBU) started the activity in 2018. Its mission is to provide all researchers at the Bellvitge Campus scientific consulting, methodological support and technological resources on bioinformatics to enhance both the number and the quality of research projects where omics data are involved. We also offer standard services to external community. Our staff has over 15 years’ experience in experimental design, omics and integrative data analyses, databases and ontologies management, pipelines and tools development, as well as a long experience in teaching formal education and training activities in the fields of omics data and bioinformatics.

Services

We assist researchers by providing:

Consultancy
  • Experimental design
  • Bioinformatics methodology
  • Bioinformatics software
  • Grant application: service quotation, sample size, planning of methods, etc.
  • Custom Service
Data analysis
  • Omics data: genomics, transcriptomics, epigenomics, proteomics, etc.
  • Data mining and analysis using public datasets
  • Combine clinical or biomedical information with omics data
  • Construction of prediction/classification models using learning techniques
Software development
  • Workflows or pipelines
  • Databases and ontologies
  • Custom tool
Training activities

Equipment

Currently, the computer resources of the unit consist of

  • 2 Workstations
    • HP Z240: 8 Intel core i7-770 CPU, 3.60GHz, 64GB RAM, 4TB HD
    • HP Z2 G4: 8 Intel core i7-8700k CPU, 3.70GHz, 64GB RAM, 2TB HD
  • 2 Desktops
    • HP ProDesk 600 G3 MT: 8 Intel core i7-770 CPU, 3.60GHz, 64GB RAM, 2TB HD
    • DELL D05D001: 4 Intel core i5-2400 CPU, 3.40GHz, 6GB RAM, 250GB HD
  • 1 Laptop
    • MackBook Air: dual-core Intel Core i5, 1.6GHz, 8GB RAM, 128GB SSD
  • 1 Network-Attached Sorage
    • Synology Rackstation RS820RP+, 24TB HD

Staff

Jose Luis Mosquera | bioinformatics@idibell.cat | ORCID | PRC Page

Publications

DGCR8 and the six hit, three-step model of schwannomatosis.
Nogué C, Chong AS, Grau E, Han H, Dorca E, Roca C, Mosquera JL, Lázaro C, Foulkes WD, Brunet J, Rivera B.
Acta Neuropathologica (2021)
DOI: 10.1007/s00401-021-02387-z
Disruption of NIPBL/Scc2 in Cornelia de Lange Syndrome provokes cohesin genome-wide redistribution with an impact in the transcriptome.
Garcia P, Fernandez-Hernandez R, Cuadrado A, Coca I, Gomez A, Maqueda M, Latorre-Pellicer A, Puisac B, Ramos FJ, Sandoval J, Esteller M, Mosquera JL, Rodriguez J, Pié J, Losada A, Queralt E.
Nature Communications 12:4551 (2021)
DOI: 10.1038/s41467-021-24808-z
Repopulation of decellularized retinas with hiPSC-derived retinal pigment epithelial and ocular progenitor cells shows cell engraftment, organization and differentiation.
Maqueda M, Mosquera JL, García-Arumí J, Veiga A, Duarri A.
Biomaterials 276:121049 (2021).
DOI: 10.1016/j.biomaterials.2021.121049
REST is a major negative regulator of endocrine differentiation during pancreas organogenesis.
Rovira M, Atla G, Maestro MA, Grau V, García-Hurtado J, Maqueda M, Mosquera JL, Yamada Y, Kerr-Conte J, Pattou F, Ferrer J.
Genes & Development 35:1229-1242 (2021).
DOI: %2010.1101/gad.348501.121
Genome-Wide RNAi Screening Identifies Novel Pathways/Genes Involved in Oxidative Stress and Repurposable Drugs to Preserve Cystic Fibrosis Airway Epithelial Cell Integrity.
Checa J, Martínez-González I, Maqueda M, Mosquera JL, Aran JM.
Antioxidants 10(12):1936 (2021)
DOI: 10.3390/antiox10121936

INSTITUTE

IDIBELL - Institut d'Investigació Biomèdica de Bellvitge

Gran Via de l'Hospitalet, 199
2a planta Edifici Terapèutic

08908 Hospitalet de Llobregat http://www.idibell.cat/

DOMAINS RIS3CAT

  • Education and knowledge generation system
  • Industrial system
  • Socio-sanitary system

CATEGORIES

  • INFORMATION TECNOLOGIES
    • Bioinformatics

RATES AND ACCESS

IDIBELL-Tarifes-2022
Availability Level: Medium
Access Procedures:

Open

FACILITIES NETWORKS

INB – Bioinformatics Platform
Provide world-class basic bioinformatics resources to the national and international life sciences research community in key fields such as functional genomics, RNA-Seq transcriptomics, genotyping, genomic medicine, and molecular dynamics simulations. Provide a platform for integrated basic bioinformatics services to the research community. Facilitate the coordinated participation of bioinformatics groups in large-scale national and international projects that require and benefit from closely collaborating teams that are known and accustomed to working together.
Network link
Reach: Spain
Status: Active
PRC page
CERCA - Ginys